Publications

Sl No. Title Authors Journal Name Publication Year
1 Eccentric placentae have reduced surface area and are associated with lower birth weight in babies small for gestational age Ravikumar G, Crasta J, Prabhu JS, Thomas T, Dwarkanath P, Thomas A, Sridhar TS, Kurpad AV J Dev Orig Health Dis 2018
2 HR+HER2- breast cancers with growth factor receptor-mediated EMT have a poor prognosis and lapatinib downregulates EMT in MCF-7 cells Desai K, Aiyappa R, Prabhu JS, Nair MG, Lawrence PV, Korlimarla A, CE Anupama, Alexander A, Kaluve RS, Manjunath S, Correa M, Srinath BS, Patil S, Kalamdani A, Prasad M, Sridhar TS Tumour Biology 2017
3 Dissecting the Biological Heterogeneity within Hormone Receptor Positive HER2 Negative Breast Cancer by Gene Expression Markers Identifies Indolent Tumors within Late Stage Disease Prabhu JS, Korlimarla A, Anupama CE, Alexander A, Raghavan R, Kaul R, Desai K, Rajarajan S, Manjunath S, Correa M, Raman R, Kalamdani A, Prasad M, Patil S, Gopinath KS, Srinath BS, Sridhar TS Translational Oncology 2017
4 NLScore: a novel quantitative algorithm based on 3 dimensional structural determinants to predict the probability of nuclear localization in proteins containing classical nuclear localization signals Hari PS, Sridhar TS, Kumar RP Journal of Molecular Modeling 2017
5 CD15 as a marker of fetoplacental endothelial immaturity in IUGR placentas Ravikumar G, Crasta J, Prabhu JS, Thomas T, Dwarkanath P, Thomas A, Kurpad AV, Sridhar TS J Matern Fetal Neonatal Med 2017
6 Identification of BRCA1 Deficiency Using Multi-Analyte Estimation of BRCA1 and Its Repressors in FFPE Tumor Samples from Patients with Triple Negative Breast Cancer Korlimarla A, Prabhu JS, Remacle J, Rajarajan S, Raja U, C E A, Srinath BS, Manjunath S, K S G, Correa M, M S N P, Sridhar TS PLoS One 2016
7 High expression of integrin beta6 in association with the Rho-Rac pathway identifies a poor prognostic subgroup within HER2 amplified breast cancers Desai K, Nair MG, Prabhu JS, Vinod A, Korlimarla A, Rajarajan S, Aiyappa R, Kaluve RS, Alexander A, Hari PS, Mukherjee G, Kumar RV, Manjunath S, Correa M, Srinath BS, Patil S, Prasad MS, Gopinath KS, Rao RN, Violette SM, Weinreb PH, Sridhar TS Cancer Medicine 2016
8 Beta3 integrin promotes chemoresistance to epirubicin in MDA-MB-231 through repression of the pro-apoptotic protein, BAD Nair MG, Desai K, Prabhu JS, Hari PS, Remacle J, Sridhar TS Experimental Cell Research 2016
9 The ethics of research on stored biological samples: outcomes of a Workshop Vaz M, Sridhar TS, Pai SA Indian J Med Ethics 2016
10 Data on alteration of hormone and growth factor receptor profiles over progressive passages of breast cancer cell lines representing different clinical subtypes Nair MG, Desai K, Prabhu JS, Hari PS, Remacle J, Sridhar TS Data in Brief 2016
11 Analysis of Clinico-Pathological Characteristics of Indian Breast CancersShows Conservation of Specific Features in the Hormone Receptor Sub-Types Mukherjee G, Lakshmaiah KC, Vijayakumar M, Prabhu JS, Telikicherla D, Sridhar TS, Kumar RV Journal of Integrative Oncology 2016
12 Placental expression of DNA methyltransferase 1 (DNMT1): Gender-specific relation with human placental growth Mukhopadhyay A, Ravikumar G, Meraaj H, Dwarkanath P, Thomas A, Crasta J, Thomas T, Kurpad AV, Sridhar TS Placenta 2016
13 Placental expression of the insulin receptor binding protein GRB10: Relation to human fetoplacental growth and fetal gender Mukhopadhyay A, Ravikumar G, Dwarkanath P, Meraaj H, Thomas A, Crasta J, Thomas T, Kurpad AV, Sridhar TS Placenta 2015
14 A Majority of Low (1-10%) ER Positive Breast Cancers Behave Like Hormone Receptor Negative Tumors Prabhu JS, Korlimarla A, Desai K, Alexander A, Raghavan R, Anupama C, Dendukuri N, Manjunath S, Correa M, Raman N, Kalamdani A, Prasad M, Gopinath KS, Srinath BS, Sridhar TS Journal of Cancer 2014
15 Separate quality-control measures are necessary for estimation of RNA and methylated DNA from formalin-fixed, paraffin-embedded specimens by quantitative PCR Korlimarla A, Prabhu JS, Anupama CE, Remacle J, Wahi K, Sridhar TS J Mol Diagn 2014
Sl No. Title Authors Journal Name Publication Year
1 Suicidal behaviour is associated with decreased esterified cholesterol in plasma and membrane fluidity of platelets Mathew B, Srinivasan K, Pradeep J, Thomas T, Mandal AK Asian J Psychiatr 2018
2 Analysis of the Quaternary Structure of Hemoglobin Beckman Variant and Molecular Interpretation of Its Functional Abnormality: A Mass-Spectrometry-Based Approach Muralidharan M, Das R, Bhat V, Mandal AK Chembiochem 2018
3 Homologs from sulfur oxidation (Sox) and methanol dehydrogenation (Xox) enzyme systems collaborate to give rise to a novel pathway of chemolithotrophic tetrathionate oxidation Pyne P, Alam M, Rameez MJ, Mandal S, Sar A, Mondal N, Debnath U, Mathew B, Misra AK, Mandal AK, Ghosh W Mol Microbiol 2018
4 Effect of altered solution conditions on tau conformational dynamics: Plausible implication on order propensity and aggregation Jebarupa B, Muralidharan M, Srinivasu BY, Mandal AK, Mitra G Biochim Biophys Acta 2018
5 Molecular insights of inhibition in sickle hemoglobin polymerization upon glutathionylation: hydrogen/deuterium exchange mass spectrometry and molecular dynamics simulation based approach Das R, Mitra A, Mitra G, Maity D, Bhat V, Pal D, Ross C, Kurpad AV, Mandal AK Biochem J 2018
6 Conjugation of para-benzoquinone of Cigarette Smoke with Human Hemoglobin Leads to Unstable Tetramer and Reduced Cooperative Oxygen Binding Mitra A, Mandal AK J Am Soc Mass Spectrom 2018
7 Effect of ascorbic acid rich, micro-nutrient fortified supplement on the iron bioavailability of ferric pyrophosphate from a milk based beverage in Indian school children Pauline, M, Verghese ST, Srinivasu BY, Bose B, Thomas T, Mandal AK, Thankachan P, Kurpad AV Asia Pac J Clin Nutr 2018
8 Conformational heterogeneity of tau: Implication on intrinsic disorder, acid stability and fibrillation in Alzheimer's disease Jebarupa B, Muralidharan M, Arun A, Mandal AK, Mitra G Biophys Chem 2018
9 Application of isotope exchange based mass spectrometry to understand the mechanism of inhibition of sickle hemoglobin polymerization upon oxygenation Das R, Mitra A, Bhat V, Mandal AK J Struct Biol 2017
10 Adsorption Induced Changes of Human Hemoglobin on Ferric Pyrophosphate Nanoparticle Surface Probed by Isotope Exchange Mass Spectrometry: An Implication on Structure-Function Correlation Srinivasu BY, Bose B, Mitra G, Kurpad AV, Mandal AK Langmuir 2017
11 Assessment of Cysteine Reactivity of Human Hemoglobin at Its Residue Level: A Mass Spectrometry-Based Approach Mitra A, Muralidharan M, Srivastava D, Das R, Bhat V, Mandal AK Hemoglobin 2017
12 Analysis of Isotopic Peaks in Hydrogen/Deuterium Exchange Mass Spectra for Precise Measurement of Isotope Average Centroid Mass of Peptides and Proteins Using R Programming Language Arun A, Narayanan S, Sarangi S, Mandal AK International Journal of Biochemistry Research & Review 2017
13 Mass Spectrometry-Based Diagnosis of Hemoglobinopathies: A Potential Tool for the Screening of Genetic Disorder Das R, Mitra G, Mathew B, Bhat V, Ross C, Pal D, Mandal AK Biochem Genet 2016
14 Protein Structure-Function Correlation in Living Human Red Blood Cells Probed by Isotope Exchange-based Mass Spectrometry Narayanan S, Mitra G, Muralidharan M, Mathew B, Mandal AK Anal Chem 2016
15 Interaction of p-benzoquinone with hemoglobin in smoker's blood causes alteration of structure and loss of oxygen binding capacity Ghosh A, Banerjee S, Mitra A, Muralidharan M, Roy B, Banerjee R, Mandal AK, Chatterjee IB Toxicol Rep 2016
16 MAP2c prevents arachidonic acid-induced fibril formation of tau: Role of chaperone activity and phosphorylation Mitra G, Gupta S, Poddar A, Bhattacharyya B Biophys Chem 2015
17 Mass spectrometry based characterization of Hb Beckman variant in a falsely elevated HbA1c sample Das R, Muralidharan M, Mitra G, Bhat V, Mathew B, Pal D, Ross C, Mandal AK Anal Biochem 2015
18 Characterization of a Double Heterozygote HbE/beta(+) Thalassemia IVS 1-1 [G>T] in a Juvenile Diabetic Bhat VS, Lokeshwarappa S, Mandal AK Indian J Clin Biochem 2015
19 Beneficiary effect of nanosizing ferric pyrophosphate as food fortificant in iron deficiency anemia: evaluation of bioavailability, toxicity and plasma biomarker Srinivasu B, Mitra G, Muralidharan M, Srivastava D, Pinto J, Thankachan P, Suresh S, Shet A, Rao S, Ravikumar G, Thomas T, Kurpad AV, Mandal AK RSC Advances 2015
20 Automated Analysis of Hemoglobin Variants Using NanoLC-MS and Customized Databases Das R, Mitra G, Mathew B, Ross C, Bhat V, Mandal AK Journal of Proteome Research 2013
21 Identification of a Rare Hemoglobin Variant HbJ-Rajappen [alpha90 (FG2) Lys ? Thr] Using Mass Spectrometry Bhat VS, Mandal AK, Mathew B Indian Journal of Clinical Biochemistry 2012
22 Glutathionyl hemoglobin is elevated in iron deficiency anemia Shet AS, Pinto SM, Mitra G, Mandal AK Acta Haematologica 2012
23 Glutathionylation induced structural changes in oxy human hemoglobin analyzed by backbone amide hydrogen/deuterium exchange and MALDI-mass spectrometry Mitra G, Muralidharan M, Narayanan S, Pinto J, Srinivasan K, Mandal AK Bioconjugate Chemistry 2012
24 Analysis of hemoglobin variants using nondenaturing gel electrophoresis and matrix-assisted laser desorption ionization mass spectrometry Mathew B, Bhat V, Mandal AK Analytical Biochemistry 2011
25 Structural perturbation of human hemoglobin on glutathionylation probed by hydrogen-deuterium exchange and MALDI mass spectrometry Mitra G, Muralidharan M, Pinto J, Srinivasan K, Mandal AK Bioconjugate Chemistry 2011
26 Characterization of a hemoglobin variant: HbQ-India / IVS 1-1 [G>T]-beta-thalassemia Bhat VS, Dewan KK, Krishnaswamy PR, Mandal AK, Balaram P Indian Journal of Clinical Biochemistry 2010
27 Analysis of protein posttranslational modifications by mass spectrometry: With special reference to haemoglobin Woodi M, Mondal AK, Padmanabhan B, Rajagopalan KP Indian Journal of Clinical Biochemistry 2009
Sl No. Title Authors Journal Name Publication Year
1 Screening of WT1 mutations in exon 8 and 9 in children with steroid resistant nephrotic syndrome from a single centre and establishment of a rapid screening assay using high-resolution melting analysis in a clinical setting Siji A, Pardeshi VC, Ravindran S, Vasudevan A, Vasudevan A BMC Medical Genetics 2017
2 NLScore: a novel quantitative algorithm based on 3 dimensional structural determinants to predict the probability of nuclear localization in proteins containing classical nuclear localization signals Hari PS, Sridhar TS, Kumar RP J Mol Model 2017
3 What accounts for ethnic differences in newborn skinfold thickness comparing South Asians and white Caucasians? Findings from the START and FAMILY birth cohorts Anand SS, Gupta MK, Schulze KM, Desai D, Abdalla N, Wahi G, Wade C, Scheufler P, McDonald SD, Morrison KM, Vasudevan A, Dwarakanath P, Srinivasan K, Kurpad A, Gerstein HC, Teo KK Int J Obes (Lond) 2015
4 TNF ? pathway blockade ameliorates effects of FSGS plasma on podocyte cytoskeleton and ?3 integrin activation Bitzan M, Babayeva S, Vasudevan A, Goodyer P, Torban E Pediatric Nephrology 2012
5 NPHS2 mutations in Indian children with sporadic early steroid resistant nephrotic syndrome Vasudevan A, Siji A, Raghavendra A, Sridhar TS, Phadke KD Indian Pediatrics 2012
6 Acute Kidney Injury in children: Look for It and Don’t Ignore It! Vasudevan A, Phadke KD Indian Pediatrics 2012
7 Management of Acute Kidney Injury Kumar G, Vasudevan A Indian Journal of Pediatrics 2012
8 Modality of choice for renal replacement therapy for children with acute kidney injury: Results of a survey Vasudevan A, Iyengar A, Phadke KD Indian Journal of Nephrology 2011
9 Evaluation of High Resolution Melting analysis as an alternate tool to screen for risk alleles associated with small kidneys in Indian newborns Raghavendra A, Siji A, Sridhar TS, Phadke K, Vasudevan A BMC Nephrology 2011
Sl No. Title Authors Journal Name Publication Year
1 Wnt and Hedgehog: Secretion of Lipid-Modified Morphogens Parchure A, Vyas N, Mayor S Trends Cell Biol 2018
2 Exosomes: mobile platforms for targeted and synergistic signaling across cell boundaries Vyas N, Dhawan J Cell Mol Life Sci 2017