Publications

Sl No. Title Authors Journal Name Publication Year
1 Expression of HER2 and EGFR Proteins in Advanced Stage High-grade Serous Ovarian Tumors Show Mutual Exclusivity. (IF:2.762) Crasta J, Ravikumar G, Rajarajan S, Gali S, Kulkarni KA, Vallikad E, Prabhu J. International Journal of Gynecological Pathology 2021
2 High expression of ACE2 in HER2 subtype of breast cancer is a marker of poor prognosis. (Cite score- 1.2) Nair MG, Prabhu JS, Sridhar TS. Cancer treatment and research communications. 2021
3 Gender disparity in COVID-19: Role of sex steroid hormones. (IF:2.285) Lipsa A, Prabhu JS. Asian Pacific journal of tropical medicine. 2021
4 miRNAs: Critical mediators of breast cancer metastatic programming. (IF: 3.905) Nair MG, Somashekaraiah VM, Ramamurthy V, Prabhu JS, Sridhar TS. Experimental Cell Research. 2021
5 Pre-Menopausal Women With Breast Cancers Having High AR/ER Ratios in the Context of Higher Circulating Testosterone Tend to Have Poorer Outcomes. (IF:5.555) Rajarajan S, Korlimarla A, Alexander A, Anupama CE, Ramesh R, Srinath BS, Sridhar TS, Prabhu JS. Frontiers in endocrinology. 2021
6 Beyond numbers – Recent understanding of emotional needs of persons diagnosed with cancer 2007–2018 Alexander A, Sreenath K, Murthy RS Indian J Palliat Care 2020
7 miR-18a Activates Wnt Pathway in ER-positive Breast Cancer and Is Associated With Poor Prognosis (IF:4.452) Nair MG, Prabhu JS, Korlimarla A, Rajarajan S, Hari PS, Kaul R, Alexander A, Raghavan R, Srinath BS, Sridhar TS Cancer Med 2020
8 Expression of HER2 and EGFR Proteins in Advanced Stage High-grade Serous Ovarian Tumors Show Mutual Exclusivity (IF:2.762) Crasta J, Ravikumar G, Rajarajan S, Gali S, Kulkarni KA, Vallikad E, Prabhu J Int J Gynecol Pathol 2020
9 Living with cancer: Urgent need for emotional health support Alexander A, Murthy RS Indian J Cancer 2020
10 Identification of colorectal cancers with defective DNA damage repair by immunohistochemical profiling of mismatch repair proteins, CDX2 and BRCA1 (Cite score- 1.63) Rajarajan S, Anupama CE, Jose B, Correa M, Sengupta S, Prabhu JS Mol Clin Oncol 2020
11 miR-18a activates Wnt pathway in ER-positive breast cancer and is associated with poor prognosis (IF:4.452) Nair MG, Prabhu JS, Korlimarla A, Rajarajan S, P S H, Kaul R, Alexander A, Raghavan R, Srinath BS, Sridhar TS Cancer Med 2020
12 Prognostic role of microRNA 182 and microRNA 18a in locally advanced triple negative breast cancer (IF:3.240) Bajaj R, Tripathi R, Sridhar TS, Korlimarla A, Choudhury KD, Suryavanshi M, Mehta A, Doval DC PLoS One 2020
13 The impact of breast cancer on the patient and the family in Indian perspective Alexander A, Kaluve R, Prabhu JS, Korlimarla A, Srinath BS, Manjunath S, Patil S, Gopinath KS, Sridhar TS Indian J Palliat Care 2019
14 Placental expression of angiogenesis-related genes and their receptors in IUGR pregnancies: correlation with fetoplacental and maternal parameters Ravikumar G, Mukhopadhyay A, Mani C, Kocchar P, Crasta J, Thomas T, Dwarkanath P, Thomas A, Kurpad AV, Sridhar TS J Matern Fetal Neonatal Med 2019
15 Progress in psycho-oncology with special reference to developing countries Murthy RS, Alexander A Curr Opin Psychiatry 2019
Sl No. Title Authors Journal Name Publication Year
1 Sickle Cell Hemoglobin Mandal AK, Mitra A, Das R Subcell Biochem 2020
2 Effect of Point Mutation on Structure-Function Correlation of Hemoglobin Variants, HbE and HbD Punjab Narayanan S, Mathew B, Srinivasu BY, Bhat V, Ross C, Mandal AK Amino Acids 2020
3 Physiological and biochemical responses of Amaranthus cruentus to polycyclic aromatic hydrocarbon pollution caused by thermal power units Tandey R, Chouhan KBS, Sen KK, Mehta R, Dubey A, Das R, Saha P, Mandal V Environ Sci Pollut Res Int 2020
4 Measuring vitamin B-12 bioavailability with [13C]-cyanocobalamin in humans Devi S, Pasanna RM, Shamshuddin Z, Bhat K, Sivadas A, Mandal AK, Kurpad AV Am J Clin Nutr 2020
5 Emerging role of Mass Spectrometry-Based Structural Proteomics in Elucidating Intrinsic Disorder in Proteins Mitra G Proteomics 2020
6 Functional prediction from conformational dynamics of glycated and glutathionylated HbE and HbD Punjab Narayanan S, Mathew B, Srinivasu BY, Muralidharan M, Bhat V, Mandal AK Current Science 2020
7 Glycation profile of minor abundant erythrocyte proteome across varying glycemic index in diabetes mellitus Muralidharan M, Bhat V, Bindu YS, Mandal AK Anal Biochem 2019
8 Understanding molecular features of aggregation-resistant tau conformer using oxidized monomer Jebarupa B, Mathew B, Srinivasu BY, Sasikumaran A, Joseph S, Mandal AK, Thomas T, Mitra G Biochim Biophys Acta Gen Subj 2019
9 Elevated levels of glutathionyl haemoglobin as an oxidative stress marker in patients with major depressive disorder Mathew B, Srinivasan K, Johnson P, Thomas T, Mandal AK Indian J Med Res 2019
10 Application of native mass spectrometry in studying intrinsically disordered proteins: A special focus on neurodegenerative diseases Mitra G Biochim Biophys Acta Proteins Proteom 2019
11 Structural analysis of glycated human hemoglobin using native mass spectrometry Muralidharan M, Bhat V, Mandal AK FEBS J 2019
12 Downregulation of apolipoprotein A-IV in plasma & impaired reverse cholesterol transport in individuals with recent acts of deliberate self-harm Mathew B, Srinivasan K, Pradeep J, Thomas T, Murthy SK, Mandal AK Indian J Med Res 2019
13 Suicidal behaviour is associated with decreased esterified cholesterol in plasma and membrane fluidity of platelets Mathew B, Srinivasan K, Pradeep J, Thomas T, Mandal AK Asian J Psychiatr 2018
14 Analysis of the Quaternary Structure of Hemoglobin Beckman Variant and Molecular Interpretation of Its Functional Abnormality: A Mass-Spectrometry-Based Approach Muralidharan M, Das R, Bhat V, Mandal AK Chembiochem 2018
15 Homologs from sulfur oxidation (Sox) and methanol dehydrogenation (Xox) enzyme systems collaborate to give rise to a novel pathway of chemolithotrophic tetrathionate oxidation Pyne P, Alam M, Rameez MJ, Mandal S, Sar A, Mondal N, Debnath U, Mathew B, Misra AK, Mandal AK, Ghosh W Mol Microbiol 2018
16 Effect of altered solution conditions on tau conformational dynamics: Plausible implication on order propensity and aggregation Jebarupa B, Muralidharan M, Srinivasu BY, Mandal AK, Mitra G Biochim Biophys Acta 2018
17 Molecular insights of inhibition in sickle hemoglobin polymerization upon glutathionylation: hydrogen/deuterium exchange mass spectrometry and molecular dynamics simulation based approach Das R, Mitra A, Mitra G, Maity D, Bhat V, Pal D, Ross C, Kurpad AV, Mandal AK Biochem J 2018
18 Conjugation of para-benzoquinone of Cigarette Smoke with Human Hemoglobin Leads to Unstable Tetramer and Reduced Cooperative Oxygen Binding Mitra A, Mandal AK J Am Soc Mass Spectrom 2018
19 Effect of ascorbic acid rich, micro-nutrient fortified supplement on the iron bioavailability of ferric pyrophosphate from a milk based beverage in Indian school children Pauline, M, Verghese ST, Srinivasu BY, Bose B, Thomas T, Mandal AK, Thankachan P, Kurpad AV Asia Pac J Clin Nutr 2018
20 Conformational heterogeneity of tau: Implication on intrinsic disorder, acid stability and fibrillation in Alzheimer's disease Jebarupa B, Muralidharan M, Arun A, Mandal AK, Mitra G Biophys Chem 2018
21 Characterization of residue-specific glutathionylation of CSF proteins in multiple sclerosis - A MS-based approach Srivastava D, Kukkuta Sarma GR, Dsouza DS, Muralidharan M, Srinivasan K, Mandal AK Anal Biochem 2018
22 Application of isotope exchange based mass spectrometry to understand the mechanism of inhibition of sickle hemoglobin polymerization upon oxygenation Das R, Mitra A, Bhat V, Mandal AK J Struct Biol 2017
23 Adsorption Induced Changes of Human Hemoglobin on Ferric Pyrophosphate Nanoparticle Surface Probed by Isotope Exchange Mass Spectrometry: An Implication on Structure-Function Correlation Srinivasu BY, Bose B, Mitra G, Kurpad AV, Mandal AK Langmuir 2017
24 Assessment of Cysteine Reactivity of Human Hemoglobin at Its Residue Level: A Mass Spectrometry-Based Approach Mitra A, Muralidharan M, Srivastava D, Das R, Bhat V, Mandal AK Hemoglobin 2017
25 Analysis of Isotopic Peaks in Hydrogen/Deuterium Exchange Mass Spectra for Precise Measurement of Isotope Average Centroid Mass of Peptides and Proteins Using R Programming Language Arun A, Narayanan S, Sarangi S, Mandal AK International Journal of Biochemistry Research & Review 2017
26 Mass Spectrometry-Based Diagnosis of Hemoglobinopathies: A Potential Tool for the Screening of Genetic Disorder Das R, Mitra G, Mathew B, Bhat V, Ross C, Pal D, Mandal AK Biochem Genet 2016
27 Protein Structure-Function Correlation in Living Human Red Blood Cells Probed by Isotope Exchange-based Mass Spectrometry Narayanan S, Mitra G, Muralidharan M, Mathew B, Mandal AK Anal Chem 2016
28 Interaction of p-benzoquinone with hemoglobin in smoker's blood causes alteration of structure and loss of oxygen binding capacity Ghosh A, Banerjee S, Mitra A, Muralidharan M, Roy B, Banerjee R, Mandal AK, Chatterjee IB Toxicol Rep 2016
29 MAP2c prevents arachidonic acid-induced fibril formation of tau: Role of chaperone activity and phosphorylation Mitra G, Gupta S, Poddar A, Bhattacharyya B Biophys Chem 2015
30 Mass spectrometry based characterization of Hb Beckman variant in a falsely elevated HbA1c sample Das R, Muralidharan M, Mitra G, Bhat V, Mathew B, Pal D, Ross C, Mandal AK Anal Biochem 2015
31 Characterization of a Double Heterozygote HbE/beta(+) Thalassemia IVS 1-1 [G>T] in a Juvenile Diabetic Bhat VS, Lokeshwarappa S, Mandal AK Indian J Clin Biochem 2015
32 Beneficiary effect of nanosizing ferric pyrophosphate as food fortificant in iron deficiency anemia: evaluation of bioavailability, toxicity and plasma biomarker Srinivasu B, Mitra G, Muralidharan M, Srivastava D, Pinto J, Thankachan P, Suresh S, Shet A, Rao S, Ravikumar G, Thomas T, Kurpad AV, Mandal AK RSC Advances 2015
33 Automated Analysis of Hemoglobin Variants Using NanoLC-MS and Customized Databases Das R, Mitra G, Mathew B, Ross C, Bhat V, Mandal AK Journal of Proteome Research 2013
34 Identification of a Rare Hemoglobin Variant HbJ-Rajappen [alpha90 (FG2) Lys ? Thr] Using Mass Spectrometry Bhat VS, Mandal AK, Mathew B Indian Journal of Clinical Biochemistry 2012
35 Glutathionyl hemoglobin is elevated in iron deficiency anemia Shet AS, Pinto SM, Mitra G, Mandal AK Acta Haematologica 2012
36 Glutathionylation induced structural changes in oxy human hemoglobin analyzed by backbone amide hydrogen/deuterium exchange and MALDI-mass spectrometry Mitra G, Muralidharan M, Narayanan S, Pinto J, Srinivasan K, Mandal AK Bioconjugate Chemistry 2012
37 Analysis of hemoglobin variants using nondenaturing gel electrophoresis and matrix-assisted laser desorption ionization mass spectrometry Mathew B, Bhat V, Mandal AK Analytical Biochemistry 2011
38 Structural perturbation of human hemoglobin on glutathionylation probed by hydrogen-deuterium exchange and MALDI mass spectrometry Mitra G, Muralidharan M, Pinto J, Srinivasan K, Mandal AK Bioconjugate Chemistry 2011
39 Characterization of a hemoglobin variant: HbQ-India / IVS 1-1 [G>T]-beta-thalassemia Bhat VS, Dewan KK, Krishnaswamy PR, Mandal AK, Balaram P Indian Journal of Clinical Biochemistry 2010
40 Analysis of protein posttranslational modifications by mass spectrometry: With special reference to haemoglobin Woodi M, Mondal AK, Padmanabhan B, Rajagopalan KP Indian Journal of Clinical Biochemistry 2009
Sl No. Title Authors Journal Name Publication Year
1 Expression Profiling of Cultured Podocytes Exposed to Nephrotic Plasma Reveals Intrinsic Molecular Signatures of Nephrotic Syndrome Panigrahi S, Pardeshi VC, Chandrasekaran K, Neelakandan K, Ps H, Vasudevan A Clin Exp Pediatr 2020
2 Role of Genetic Screening in the Management of Familial Focal Segmental Glomerulosclerosis: A Tale of Two Sisters Siji A, Iyengar A, Vasudevan A Indian J Nephrol 2019
3 Targeted gene panel for genetic testing of south Indian children with steroid resistant nephrotic syndrome Siji A, Karthik KN, Pardeshi VC, Hari PS, Vasudevan A BMC Med Genet 2018
4 Association between polymorphisms in genes regulating Vitamin A metabolism and kidney size in Indian newborns Narikot A, Pardeshi VC, Siji A, Raghavendra A, George A, Vasudevan A Asian J Pediatr Nephrol 2018
5 Screening of WT1 mutations in exon 8 and 9 in children with steroid resistant nephrotic syndrome from a single centre and establishment of a rapid screening assay using high-resolution melting analysis in a clinical setting Siji A, Pardeshi VC, Ravindran S, Vasudevan A, Vasudevan A BMC Medical Genetics 2017
6 NLScore: a novel quantitative algorithm based on 3 dimensional structural determinants to predict the probability of nuclear localization in proteins containing classical nuclear localization signals Hari PS, Sridhar TS, Kumar RP J Mol Model 2017
7 What accounts for ethnic differences in newborn skinfold thickness comparing South Asians and white Caucasians? Findings from the START and FAMILY birth cohorts Anand SS, Gupta MK, Schulze KM, Desai D, Abdalla N, Wahi G, Wade C, Scheufler P, McDonald SD, Morrison KM, Vasudevan A, Dwarakanath P, Srinivasan K, Kurpad A, Gerstein HC, Teo KK Int J Obes (Lond) 2015
8 TNF ? pathway blockade ameliorates effects of FSGS plasma on podocyte cytoskeleton and ?3 integrin activation Bitzan M, Babayeva S, Vasudevan A, Goodyer P, Torban E Pediatric Nephrology 2012
9 NPHS2 mutations in Indian children with sporadic early steroid resistant nephrotic syndrome Vasudevan A, Siji A, Raghavendra A, Sridhar TS, Phadke KD Indian Pediatrics 2012
10 Acute Kidney Injury in children: Look for It and Don’t Ignore It! Vasudevan A, Phadke KD Indian Pediatrics 2012
11 Management of Acute Kidney Injury Kumar G, Vasudevan A Indian Journal of Pediatrics 2012
12 Modality of choice for renal replacement therapy for children with acute kidney injury: Results of a survey Vasudevan A, Iyengar A, Phadke KD Indian Journal of Nephrology 2011
13 Evaluation of High Resolution Melting analysis as an alternate tool to screen for risk alleles associated with small kidneys in Indian newborns Raghavendra A, Siji A, Sridhar TS, Phadke K, Vasudevan A BMC Nephrology 2011
Sl No. Title Authors Journal Name Publication Year
1 The primary cilium dampens proliferative signaling and represses a G2/M transcriptional network in quiescent myoblasts Venugopal N, Ghosh A, Gala H, Aloysius A, Vyas N, Dhawan J BMC Mol Cell Biol 2020
2 Stromal cells downregulate miR-23a-5p to activate protective autophagy in acute myeloid leukemia Ganesan S, Palani HK, Lakshmanan V, Balasundaram N, Alex AA, David S, Venkatraman A, Korula A, George B, Balasubramanian P, Palakodeti D, Vyas N, Mathews V Cell Death Dis 2019
3 RhoC: a fascinating journey from a cytoskeletal organizer to a Cancer stem cell therapeutic target Thomas P, Pranatharthi A, Ross C, Srivastava S J Exp Clin Cancer Res 2019
4 RhoC regulates radioresistance via crosstalk of ROCK2 with the DNA repair machinery in cervical cancer Pranatharthi A, Thomas P, Udayashankar AH, Bhavani C, Suresh SB, Krishna S, Thatte J, Srikantia N, Ross CR, Srivastava S J Exp Clin Cancer Res 2019
5 Wnt and Hedgehog: Secretion of Lipid-Modified Morphogens Parchure A, Vyas N, Mayor S Trends Cell Biol 2018
6 Exosomes: mobile platforms for targeted and synergistic signaling across cell boundaries Vyas N, Dhawan J Cell Mol Life Sci 2017